MOSAL: software tools for multiobjective sequence alignment
نویسندگان
چکیده
منابع مشابه
Heuristics for multiobjective multiple sequence alignment
BACKGROUND Aligning multiple sequences arises in many tasks in Bioinformatics. However, the alignments produced by the current software packages are highly dependent on the parameters setting, such as the relative importance of opening gaps with respect to the increase of similarity. Choosing only one parameter setting may provide an undesirable bias in further steps of the analysis and give to...
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Pairwise sequence alignment is ubiquitous in modern bioinformatics. It may be performed either explicitly, e.g. to find the most similar sequences in a database, or implicitly as a hidden building block of more complex methods, e.g. for reads mapping. The alignment algorithms have been widely investigated over the last few years, mainly with respect to their speed. However, no attention was giv...
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Date The box is present here to hide the page number. Nothing in white shows up when printed. iii ACKNOWLEDGEMENTS I would like to thank all members of my committee: The weekly meetings for the past year with Dan, Vaughn, and Phil have been essential in this collaborative project. Dan has been instrumental in his interest and insights into the project. None of this would have been possible with...
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ژورنال
عنوان ژورنال: Source Code for Biology and Medicine
سال: 2014
ISSN: 1751-0473
DOI: 10.1186/1751-0473-9-2